Specialty Guide · Path-iQ Global Pathology Review

Lung Pathology
The Complete Guide 2026

Lung cancer is the leading cause of cancer death worldwide, killing more people annually than breast, prostate, and colorectal cancer combined. Lung pathology demands accurate histological subtyping on small biopsies, optimal specimen management to preserve molecular testing material, and fluency with an ever-expanding biomarker landscape where each positive drives a different targeted therapy or immunotherapy eligibility.

Updated 30 July 2026 · Path-iQ Editorial · About Path-iQ →

WHO 2021 Lung Tumour Classification — Main Entities

TumourFrequencyHistologyIHC ProfileKey Molecular Targets
Adenocarcinoma~40% of lung cancersLepidic, acinar, papillary, micropapillary, solid patterns; mucin production; Clara cell / type II pneumocyte differentiationTTF-1+, Napsin A+, CK7+; p40−EGFR (exon 19 del, exon 21 L858R), KRAS G12C, ALK, ROS1, NTRK1/2/3, MET exon 14, BRAF V600E, RET; PD-L1 TPS
Squamous cell carcinoma~25–30%Keratinisation, intercellular bridges; solid/nested growth; central/hilar; rarely peripheralp40+++, CK5/6+, TTF-1−, Napsin A−FGFR1 amplification; CDKN2A del; limited targeted options; PD-L1 TPS important for pembrolizumab
Small cell lung carcinoma (SCLC)~15%Small cells with scant cytoplasm, nuclear moulding, "salt-and-pepper" chromatin; high mitotic rate; necrosis; crush artefact in biopsySynaptophysin+, Chromogranin A+, CD56+, TTF-1+ (~70%); p40−; CK7 weak/focal; TdT−TP53+RB1 co-inactivation nearly universal; SCLC-A (ASCL1), -N (NEUROD1), -P (POU2F3), -I (YAP1) molecular subtypes; atezolizumab (IMpower133) added to first-line chemo
Large cell carcinoma~5–10% (decreasing with IHC)Large polygonal cells; no squamous, glandular, or NE differentiation; diagnosis of exclusion after IHCNo lineage IHC markers; TTF-1−, p40−, Syn−, CgA−Molecular profiling still recommended; some harbor KRAS, TP53, STK11 mutations
Large cell NE carcinoma (LCNEC)~3%Large cells with NE morphology (palisading, rosettes) AND high mitotic count (>10/10HPF) AND NE IHC; overlaps with SCLC in biologySyn+ and/or CgA+; TTF-1 variable; p40−; Ki-67 high (>40%)Two major genomic subsets: SCLC-like (RB1 loss) and NSCLC-like (KRAS mut, no RB1 loss); managed as SCLC or NSCLC depending on genomic profile
Adenosquamous carcinoma~1–4%Both adenocarcinoma AND squamous cell carcinoma components (>10% each) in same tumour; worst prognosis of NSCLCBoth TTF-1+ and p40+ areas; requires sampling both componentsEGFR mutations can occur; molecular testing indicated despite mixed histology
Carcinoid / Typical carcinoid~1–2%Organoid, trabecular nests; minimal mitoses (<2/10 HPF); no necrosis; uniform cellsSyn+++, CgA+++, CD56+; Ki-67 <5%; TTF-1 negative (helps distinguish from atypical carcinoid)MEN1 mutations in familial cases; DOTATATE PET positive; somatostatin analogues; everolimus for progressive disease

Small Biopsy and Cytology — NSCLC Subtyping Algorithm

Over 70% of lung cancer patients present at an advanced stage, making small biopsies (bronchoscopic biopsy, CT-guided core needle biopsy) or cytology (EBUS-FNA, pleural effusion) the primary diagnostic material. The pathologist must balance accurate subtyping with tissue conservation for molecular testing.

Minimal IHC approach for NSCLC subtyping on small biopsy:

Molecular Biomarker Testing — The 2026 Required Panel

All guidelines (CAP/IASLC/AMP, ESMO, NCCN) recommend comprehensive molecular testing for all advanced non-squamous NSCLC at diagnosis. Squamous cell carcinoma patients who are never/light smokers or have atypical clinical features should also receive molecular testing. Testing modality: broad-panel NGS is preferred over sequential single-gene testing to conserve tissue, reduce turnaround time, and detect rare actionable alterations.

BiomarkerAlteration TypeFrequency in AdenoApproved TherapyTesting Method
EGFRPoint mutation / small indel; exon 19 del, exon 21 L858R (classic); exon 20 ins (resistance to classic TKIs)~15% (Western); ~40–50% (East Asian)Osimertinib (1st line); erlotinib, gefitinib, afatinib (older); amivantamab + lazertinib (exon 20 ins)DNA NGS; PCR; allele-specific PCR; liquid biopsy ctDNA for T790M resistance monitoring
KRAS G12CPoint mutation (G12C specifically targetable)~13% (Western); ~5% East AsianSotorasib (Lumakras); adagrasib (Krazati)DNA NGS; PCR; cobas KRAS Mutation Test (CDx for sotorasib)
ALKGene rearrangement / fusion (EML4-ALK most common)~3–5%Alectinib, brigatinib, lorlatinib (2nd/3rd gen); crizotinib (older)IHC (D5F3 clone, Ventana CDx) as screening; FISH or RNA NGS for confirmation; RNA fusion testing preferred
ROS1Gene rearrangement / fusion (CD74-ROS1 most common)~1–2%Crizotinib; entrectinib; lorlatinibFISH; RNA NGS; ROS1 IHC (D4D6 clone) for screening in experienced labs
MET exon 14 skippingSplice site mutations causing exon 14 skipping → MET activation~3%Capmatinib (Tabrecta); tepotinib (Tepmetko)DNA NGS (splice site variants); RNA NGS preferred to detect exon skipping directly; IHC unreliable
BRAF V600EPoint mutation~2%Dabrafenib + trametinibDNA NGS; PCR; IHC (VE1 clone) for screening in some protocols
RETGene rearrangement / fusion (KIF5B-RET most common)~1–2%Selpercatinib (Retevmo); pralsetinib (Gavreto)RNA NGS preferred; FISH; RET-specific IHC not available clinically
NTRK1/2/3Gene fusion (rare but highly actionable)<1%Larotrectinib (Vitrakvi); entrectinib (Rozlytrek)IHC (pan-TRK, clone A7H6R) for screening; RNA NGS for confirmation and partner identification
PD-L1Protein expression (TPS — tumour proportion score)All NSCLCPembrolizumab (TPS ≥50% 1st line; ≥1% with chemo); atezolizumab; cemiplimabIHC — 22C3 (Dako) CDx for pembrolizumab; 28-8 for nivolumab; SP142 for atezolizumab; not interchangeable
STK11 / KEAP1Loss-of-function mutations~10–20% (STK11), ~10% (KEAP1)Negative predictors — STK11/KEAP1 mutation associated with reduced immunotherapy benefit even in PD-L1-high KRAS-mutant NSCLCDNA NGS; IHC (STK11 loss useful for STK11-inactivating mutations; KEAP1 IHC less reliable)

PD-L1 Scoring — TPS vs CPS

The tumour proportion score (TPS) counts the percentage of viable tumour cells with any partial or complete membranous PD-L1 staining at the 1+ intensity threshold. TPS is the scoring method for NSCLC. The combined positive score (CPS) — used in gastric, urothelial, cervical, and other tumour types — includes tumour cells plus immune cells and stromal cells as the numerator. For NSCLC:

Leading Lung Pathologists — Global 2026

William Travis
Lung Tumour Pathology & WHO Classification
Memorial Sloan Kettering Cancer Center

World's foremost authority on lung tumour pathology. Chair of the WHO/IASLC/AMP multidisciplinary expert panel that produced the 2011 and 2015 IASLC/ATS/ERS lung adenocarcinoma classifications and co-edited the WHO 2021 Thoracic Tumours Blue Book (5th edition).

Ming-Sound Tsao
Lung Molecular Pathology
Princess Margaret Cancer Centre, Toronto

International authority on molecular testing in lung cancer pathology, EGFR/ALK/ROS1/PD-L1 biomarker testing standardisation, and CAP/IASLC/AMP molecular testing guidelines. Expert on early-stage lung cancer pathology and prognostic biomarkers.

Yasushi Yatabe
Lung Pathology & Molecular Testing
National Cancer Center Hospital, Tokyo

Japan's leading lung pathologist; key contributor to WHO 2021 lung classification. Pioneer in integrated molecular-morphological classification of lung adenocarcinoma in the Asia-Pacific context; expert on EGFR mutation testing in East Asian populations.

Keith Kerr
Lung Pathology & PD-L1 Testing
Aberdeen Royal Infirmary / University of Aberdeen

Europe's leading lung pathologist; past president of the European Society of Pathology. International authority on PD-L1 IHC testing standardisation, the Blueprint Project (comparing PD-L1 assay comparability), and NSCLC biomarker reporting for clinical trials.

Lukas Bubendorf
Lung Cytopathology & Molecular Testing
University Hospital Basel

Expert in lung cytopathology and the use of cytological specimens (EBUS-FNA, effusion) for molecular testing in NSCLC. Pioneer in liquid biopsy and cell-free DNA approaches for lung cancer biomarker monitoring in Europe.

Iver Petersen
Lung Pathology — Central Europe
Helios Klinikum Erfurt / Friedrich Schiller University Jena

Past president of the German Society of Pathology; leading lung pathologist in Germany. Expert in neuroendocrine tumours of the lung, molecular subtyping of SCLC, and quality assurance in lung cancer molecular diagnostics.

Frequently Asked Questions

What is the difference between adenocarcinoma in situ and minimally invasive adenocarcinoma?
Adenocarcinoma in situ (AIS) is defined as a ≤3 cm solitary adenocarcinoma with a pure lepidic growth pattern (tumour cells growing along alveolar walls without stromal, vascular, or pleural invasion) and no invasive component. It appears as a pure ground-glass opacity (GGO) on CT. Minimally invasive adenocarcinoma (MIA) has the same ≤3 cm constraint with a predominantly lepidic pattern, but contains a small invasive component ≤5 mm. Both AIS and MIA carry a near-100% 5-year disease-specific survival after complete resection. The key distinction from invasive adenocarcinoma is that the invasive component of MIA must be ≤5 mm and must not show lymphovascular invasion, spread through air spaces, or pleural invasion.
Is IHC sufficient to confirm ALK rearrangement in lung cancer?
In experienced laboratories using the Ventana D5F3 CDx IHC assay with a stringent scoring algorithm (strong granular cytoplasmic staining in ≥25% of tumour cells = positive; any weaker or focal staining = negative), IHC has sensitivity and specificity for ALK rearrangement approaching 97–99%, validated against FISH. The FDA-approved D5F3 Ventana assay is a standalone companion diagnostic for alectinib in the US and most regulatory markets. However, for clinical trial eligibility or when IHC is equivocal, FISH or RNA-based NGS fusion testing is recommended as confirmatory. RNA-based NGS is the most sensitive method and identifies the specific fusion partner, which can be important for novel fusions that may have different sensitivity to ALK inhibitors.
How should tissue be allocated when a small lung biopsy is received?
On receipt of a small biopsy (bronchoscopic or CT-guided core), the priority hierarchy is: (1) morphological diagnosis — minimum IHC needed for subtyping; (2) molecular biomarker testing — sufficient tumour-rich material for NGS DNA and RNA extraction; (3) PD-L1 IHC. Practically: cut at least 10–20 levels at initial sectioning to create unstained slides in reserve; use no more than 2–3 IHC stains for subtyping; avoid exhausting the block on reflex IHC before a molecular request is made. Where a separate core or cell block from liquid-based cytology is available, allocate it specifically for molecular testing. Ideally, molecular testing on a lung biopsy should yield at least 50 ng DNA and 20% tumour content to give reliable NGS results, though most platforms can work with less.

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